CPM PAPERS

1. Tomohiro Koana, Vincent Froese and Rolf Niedermeier. 
Parameterized Algorithms for Matrix Completion With Radius Constraints 
file 1-Radius.pdf

2. Veli Mäkinen and Kristoffer Sahlin. 
Chaining with Overlaps Revisited 
file 2-Chaining.pdf 

3. Pawel Gawrychowski, Samah Ghazawi and Gad M. Landau. 
On Indeterminate Strings Matching 
file 3-Indeterminate.pdf 

4. Djamal Belazzougui and Gregory Kucherov. 
Efficient tree-structured categorical retrieval 
file 4-TaxaRetrieval.pdf 

5. Manuel Lafond, Binhai Zhu and Peng Zou. 
Genomic Problems Involving Copy Number Profiles: Complexity and Algorithms 
file 5-CNP.pdf 

6. Dominik Köppl, Daiki Hashimoto, Diptarama Hendrian and Ayumi Shinohara. 
In-Place Bijective Burrows Wheeler Transformations 
file 6-BijBWT.pdf 

7. Amihood Amir, Ayelet Butman, Gad M. Landau, Shoshana Marcus and Dina Sokol. 
Double String Tandem Repeats 
file 7-Tandem.pdf 

RECOMB PAPERS

8. Zach DiNardo, Kiran Tomlinson, Anna Ritz and Layla Oesper 
Distance Measures for Tumor Evolutionary Trees
file 8-TumorTree.pdf

9. Gryte Satas, Simone Zaccaria, Geoffrey Mon and Ben Raphael
Single-Cell Tumor Phylogeny Inference with copy-Number constrained mutation losses
file 9-TumorPhylo.pdf

10. Salem Malikic, Farid Rashidi Mehrabadi, Simone Ciccolella, Md. Khaledur Rahman, Camir Ricketts, Ehsan Haghshenas, Daniel Seidman, Faraz Hach, Iman Hajirasouliha and S. Cenk Sahinalp
PhISCS: A Combinatorial Approach for Sub-perfect Tumor Phylogeny Reconstruction via Integrative use of Single-cell and Bulk Sequencing Data
file 10-MixTumorPhylo.pdf

11. Leonard Bohnenkämper, Marilia Braga, Daniel Doerr and Jens Stoye 
Computing the rearrangement distance of natural genomes
file 11-Rearrangement.pdf

12. Konrad Karczewski, Laurent Francioli, Grace Tiao, Beryl Cummings, Jessica Alfoldi, Qingbo Wang, Benjamin Neale, Mark Daly and Daniel MacArthur
The mutational constraint spectrum quantified from variation in 141,456 humans
file 12-MutationalConstraint.pdf

13. Tavor Baharav, Govinda Kamath, David Tse and Ilan Shomorony
Spectral Jaccard Similarity: A new approach to estimating pairwise sequence alignments
file 13-SpectralJaccard.pdf

14. Aritra Bose, Myson Burch, Agniva Chowdhury, Peristera Paschou and Petros Drineas
CluStrat: a structure informed clustering strategy for population stratification
file 14-CluStrat.pdf

15. Tyler Joseph, Amey Pasarkar and Itsik Pe'Er
Efficient and accurate inference of microbial trajectories from longitudinal count data
file 15-Longitudinal.pdf

16. Jasmijn Baaijens, Leen Stougie and Alexander Schoenhuth
Strain-aware assembly of genomes from mixed samples using flow variation graphs
file 16-AssemblyFlow.pdf

17. Pesho Ivanov, Benjamin Bichsel, Harun Mustafa, André Kahles, Gunnar Rätsch, Martin Vechev
AStarix: Fast and Optimal Sequence-to-Graph Alignment
file 17-Astarix.pdf

18. Ahsan Sanaullah, Degui Zhi and Shaojie Zhang
d-PBWT: dynamic positional Burrows-Wheeler transform
file 18-dPBWT.pdf

19. Hyunghoon Cho, Sean Simmons, Ryan Kim and Bonnie Berger
Privacy-preserving biomedical database queries with optimal privacy-utility trade-offs
file 19-PPbioDB.pdf

20. Amatur Rahman and Paul Medvedev
Representation of k-mer sets using spectrum-preserving string sets
file 20-StringSet.pdf

21. Hongyu Zheng, Carl Kingsford and Guillaume Marcais
Lower density selection schemes via small universal hitting sets with short remaining path length
file 21-Selection.pdf

22. Anton Bankevich and Pavel Pevzner
MosaicFlye: Resolving Long Mosaic Repeats Using Long Reads
file 22-Repeats.pdf

23. Nadav Brandes, Nathan Linial and Michal Linial 
PWAS: Proteome-Wide Association Study
file 23-Pwas.pdf

24. Gizem Caylak and A. Ercument Cicek
Potpourri:  An Epistasis Test Prioritization Algorithm via DiverseSNP Selection
file 24-Poutpourri.pdf

25. Nathan Lapierre, Kodi Taraszka, Helen Huang, Rosemary He, Farhad Hormozdiari and Eleazar Eskin
Identifying Causal Variants by Fine Mapping Across Multiple Studies
file 25-CausalVariant.pdf

26. Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali,
and Gianluca Della Vedova
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
file 26-MP3distance.pdf