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bio:start [30/04/2019 alle 16:07 (5 anni fa)] Nadia Pisanti |
bio:start [07/07/2021 alle 07:30 (3 anni fa)] (versione attuale) Nadia Pisanti [BIOINFORMATICS] |
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| - | ====== BIOINFORMATICS ====== | + | ====== BIOINFORMATICS |
| - | Lecturer: **Nadia Pisanti** | + | Lecturer: |
| === NEWS === | === NEWS === | ||
| - | [April 30th] Please be aware that there will be no class on Monday, May 27th due to University cancelling all lectures on that day to allow students to go home and vote for EU elections. | + | [February 8th] This page has been created! |
| - | [April 15th] As communicated in the class, on Monday April 29th we will lecture 4 academic hours starting at 14:00 to catch up the classes that were canceled last week. | + | ===== CLASSES IN COVID-19 TIMES ===== |
| - | [April 1st *not a joke*] I recall that next week there will be no classes | + | **Regular live classes |
| + | Classes will thus take place [[https:// | ||
| - | [March 26th] Papers have been assigned! __The student Antonio Nuzzo is asked to send an email to prof.Pisanti__ (his email bounced). | + | Prof. Pisanti makes office hours on skype or meet upon appointment arranged by mail.\\ |
| - | [March 12th] The assignment of papers for the seminar will take place on Monday March 25th. | ||
| - | |||
| - | [March 5th] From now on, in absence of news, lectures will be on Monday' | ||
| - | |||
| - | [February 27th] Next week we will have classes on Monday both at 14:00 and at 16:00, and both in room L1. | ||
| - | |||
| - | [February 12th] The classes of April 8th and April 9th will not take place: we will have to find two slots to catch them up. | ||
| - | |||
| - | [February 12th] This page has been created! | ||
| === LEARNING GOALS === | === LEARNING GOALS === | ||
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| //Sequences Alignments//: | //Sequences Alignments//: | ||
| //Pattern Matching//: Exact Pattern Matching: algorithms (Knuth-)Morris-Pratt, | //Pattern Matching//: Exact Pattern Matching: algorithms (Knuth-)Morris-Pratt, | ||
| - | //Motifs Extraction//: | + | //Motifs Extraction//: |
| //Finding Repetitions//: | //Finding Repetitions//: | ||
| //Fragment Assembly//: Genomes sequencing: some history, scientific opportunities, | //Fragment Assembly//: Genomes sequencing: some history, scientific opportunities, | ||
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| === STUDY MATERIAL === | === STUDY MATERIAL === | ||
| - | SUFFIX TREE {{:magistraleinformatica:alg2:tre.pdf|}} \\ | + | SEQUENCES ALIGNMENTS |
| - | PATTERN MATCHING {{: | + | PATTERN MATCHING {{: |
| - | FRAGMENT ASSEMBLY | + | SUFFIX TREE {{: |
| - | SEQUENCES ALIGNMENTS | + | EXACT MOTIFS EXTRACTION |
| - | FINDING REPETITIONS: | + | APPROXIMATE MOTIFS EXTRACTION |
| - | NEW GENERATION SEQUENCING {{: | + | FINDING REPETITIONS: |
| - | OVERVIEW OF SEQUENCING TECNOLOGIES {{: | + | FRAGMENT ASSEMBLY {{: |
| - | BUBBLES IN DE BRUIJN GRAPHS (slides) {{bio: | + | NEW GENERATION SEQUENCING {{: |
| + | OVERVIEW OF SEQUENCING TECNOLOGIES {{: | ||
| + | HAPLOTYPE ASSEMBLY {{: | ||
| + | BUBBLES IN DE BRUIJN GRAPHS (slides) {{bio: | ||
| == EXAM ASSIGNMENT == | == EXAM ASSIGNMENT == | ||
| - | Each student is assigned a paper that is a very recent scientific work on topics related to those of the course (tipically it is a paper accepted for publication in the proceedings of an international conference that is going to be held in a few weeks/ | + | Each student will have to undergo an oral exam over the topics of the classes. |
| + | Moreover, each student is assigned a paper that is a very recent scientific work on topics related to those of the course (tipically it is a paper accepted for publication in the proceedings of an international conference that is going to be held in a few weeks/ | ||
| Once the student has his/her paper assigned, the task is to prepare and make a presentation of that work that: | Once the student has his/her paper assigned, the task is to prepare and make a presentation of that work that: | ||
| (1) describes the results presented in that paper, (2) is suited for the actual audience (that will be the course class) as for comprehension opportunity, | (1) describes the results presented in that paper, (2) is suited for the actual audience (that will be the course class) as for comprehension opportunity, | ||
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| === SEMINARS SCHEDULE === | === SEMINARS SCHEDULE === | ||
| - | TBD | + | TBA |
| === " | === " | ||
| - | | + | [[https:// |
| + | |||
| + | ===== WHITEBOARDS AND RECORDING OF LECTURES and MATERIAL ===== | ||
| + | ^ Lecture Date ^ Topic ^ Material ^ | ||
| + | | dd/mm/aaaa | bla bla | links and files | | ||
bio/start.1556640436.txt.gz · Ultima modifica: 30/04/2019 alle 16:07 (5 anni fa) da Nadia Pisanti
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