bio:start
Differenze
Queste sono le differenze tra la revisione selezionata e la versione attuale della pagina.
Entrambe le parti precedenti la revisioneRevisione precedenteProssima revisione | Revisione precedente | ||
bio:start [26/03/2019 alle 13:47 (6 anni fa)] – Nadia Pisanti | bio:start [07/07/2021 alle 07:30 (4 anni fa)] (versione attuale) – [BIOINFORMATICS] Nadia Pisanti | ||
---|---|---|---|
Linea 1: | Linea 1: | ||
- | ====== BIOINFORMATICS ====== | + | ====== BIOINFORMATICS |
- | Lecturer: **Nadia Pisanti** | + | Lecturer: |
=== NEWS === | === NEWS === | ||
- | [March 26th] Papers have been assigned! The student Antonio Nuzzo is asked to send an email to prof.Pisanti. | + | [February 8th] This page has been created! |
- | [March 12th] The assignment of papers for the seminar will take place on Monday March 25th. | + | ===== CLASSES IN COVID-19 TIMES ===== |
- | [March 5th] From now on, in absence of news, lectures | + | **Regular live classes are suspended from March 5th, 2020** \\ |
+ | Classes | ||
- | [February 27th] Next week we will have classes | + | Prof. Pisanti makes office hours on skype or meet upon appointment arranged by mail.\\ |
- | [February 12th] The classes of April 8th and April 9th will not take place: we will have to find two slots to catch them up. | ||
- | |||
- | [February 12th] This page has been created! | ||
=== LEARNING GOALS === | === LEARNING GOALS === | ||
Linea 27: | Linea 25: | ||
//Sequences Alignments//: | //Sequences Alignments//: | ||
//Pattern Matching//: Exact Pattern Matching: algorithms (Knuth-)Morris-Pratt, | //Pattern Matching//: Exact Pattern Matching: algorithms (Knuth-)Morris-Pratt, | ||
- | //Motifs Extraction//: | + | //Motifs Extraction//: |
//Finding Repetitions//: | //Finding Repetitions//: | ||
//Fragment Assembly//: Genomes sequencing: some history, scientific opportunities, | //Fragment Assembly//: Genomes sequencing: some history, scientific opportunities, | ||
Linea 38: | Linea 36: | ||
=== STUDY MATERIAL === | === STUDY MATERIAL === | ||
- | SUFFIX TREE {{:magistraleinformatica:alg2:tre.pdf|}} \\ | + | SEQUENCES ALIGNMENTS |
- | PATTERN MATCHING {{: | + | PATTERN MATCHING {{: |
- | FRAGMENT ASSEMBLY | + | SUFFIX TREE {{: |
- | SEQUENCES ALIGNMENTS | + | EXACT MOTIFS EXTRACTION |
- | FINDING REPETITIONS: | + | APPROXIMATE MOTIFS EXTRACTION |
- | NEW GENERATION SEQUENCING {{: | + | FINDING REPETITIONS: |
- | OVERVIEW OF SEQUENCING TECNOLOGIES {{: | + | FRAGMENT ASSEMBLY {{: |
- | BUBBLES IN DE BRUIJN GRAPHS (slides) {{bio: | + | NEW GENERATION SEQUENCING {{: |
+ | OVERVIEW OF SEQUENCING TECNOLOGIES {{: | ||
+ | HAPLOTYPE ASSEMBLY {{: | ||
+ | BUBBLES IN DE BRUIJN GRAPHS (slides) {{bio: | ||
== EXAM ASSIGNMENT == | == EXAM ASSIGNMENT == | ||
- | Each student is assigned a paper that is a very recent scientific work on topics related to those of the course (tipically it is a paper accepted for publication in the proceedings of an international conference that is going to be held in a few weeks/ | + | Each student will have to undergo an oral exam over the topics of the classes. |
+ | Moreover, each student is assigned a paper that is a very recent scientific work on topics related to those of the course (tipically it is a paper accepted for publication in the proceedings of an international conference that is going to be held in a few weeks/ | ||
Once the student has his/her paper assigned, the task is to prepare and make a presentation of that work that: | Once the student has his/her paper assigned, the task is to prepare and make a presentation of that work that: | ||
(1) describes the results presented in that paper, (2) is suited for the actual audience (that will be the course class) as for comprehension opportunity, | (1) describes the results presented in that paper, (2) is suited for the actual audience (that will be the course class) as for comprehension opportunity, | ||
Linea 57: | Linea 59: | ||
=== SEMINARS SCHEDULE === | === SEMINARS SCHEDULE === | ||
- | TBD | + | TBA |
=== " | === " | ||
- | | + | [[https:// |
+ | |||
+ | ===== WHITEBOARDS AND RECORDING OF LECTURES and MATERIAL ===== | ||
+ | ^ Lecture Date ^ Topic ^ Material ^ | ||
+ | | dd/mm/aaaa | bla bla | links and files | |
bio/start.1553608035.txt.gz · Ultima modifica: 26/03/2019 alle 13:47 (6 anni fa) da Nadia Pisanti